Pages tagged "Queries"

2019

Example Queries

This page gives examples for query strings against Beacon implementations. This documentation is expected to be expanded over time, with adjustments for the expanding protocol options.

@mbaudis 2019-09-24: more ...

Genome Coordinate use for Beacon Queries

The coordinate system that should be used throughout GA4GH standards is 0-based half open.

@mbaudis 2019-03-14: more ...

2018

FAQ - Precise Variants

Precise variants are such with annotated sequences of 0….n length, and bases of [ATCGN] for the referenceBases and alternateBases attributes (N for “not specified”).

Examples for variant queries can be found in the “Example Queries” documentation.

@mbaudis 2018-10-17: more ...

Range Queries and Structural Variants

This page provides some more detailed description of the “4 positions match any continuous region” concept. General examples for variant queries can be found in the “Example Queries” documentation.

@mbaudis 2018-10-17: more ...