GenomicVariantFields [beacon-v2]

{S}[B] Status Level [i]
playground
Provenance
Used by
Contributors
Source (2.0.0-draft.1)

Attributes

Type: object
Description: All the required fields to query any kind of variant (e.g. SNP, DUP, etc.).

Properties

Property Type
alternateBases ./AlternateBases [HTML]
assemblyId ./Assembly [HTML]
end array of "integer"
id string
mateName ./Chromosome [HTML]
referenceBases ./ReferenceBases [HTML]
referenceName ./Chromosome [HTML]
start array of "integer"
variantType string

alternateBases

assemblyId

end

Precise or fuzzy end coordinate(s) (0-based, exclusive). See start. For fuzzy matches, provide 2 values in the array (e.g. [111,222]).

id

Id of the variant to display.

mateName

referenceBases

referenceName

start

Precise or fuzzy start coordinate position(s), allele locus (0-based, inclusive).

variantType

The variantType is used to denote e.g. structural variants. Examples:


2020-05-25