An open-access online tutorial How to install and deploy Beacon has been launched on the ELIXIR-SI eLearning Platform (EeLP). Learning materials are provided by ELIXIR Beacon project contributors from Finland and Spain.
The tutorial is registered on ELIXIR Training eSupport System (TeSS) and contains instructions for Beacon installation and deployment, both as instruction manual and tutorial video. No username and password is required to access the tutorial.
@markowhatever 2019-03-26: more ...
In an ideal scenario, your Github served website could be build locally, with the same output structure and layout.
@mbaudis 2019-03-14: more ...
The YAML headers are necessary to process the Markdown (or HTML) files in the page collections. The Progenetix Jekyll template uses standard Jekyll headers, but also adds some additional parameters.
@mbaudis 2019-03-14: more ...
The Progenetix Jekyll template modifies the standard Jekyll file structure.
@mbaudis 2019-03-14: more ...
New pages are added to the website inside one of the “collections” directories in the / directory. This can either be done by adding files locally or on Github (if hosted there).
@mbaudis 2019-03-25: more ...
This page provides some more detailed description of the “4 positions match any continuous region” concept. General examples for variant queries can be found in the “Example Queries” documentation.
@mbaudis 2018-10-17: more ...
The coordinate system that should be used throughout GA4GH standards is 0-based half open.
@mbaudis 2019-03-14: more ...
Precise variants are such with annotated sequences of 0….n length, and bases
of [ATCGN] for the referenceBases and alternateBases attributes (N for
“not specified”).
Examples for variant queries can be found in the “Example Queries” documentation.
@mbaudis 2018-10-17: more ...
This page gives examples for query strings against Beacon implementations. This documentation is expected to be expanded over time, with adjustments for the expanding protocol options.
@mbaudis 2019-09-24: more ...
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